PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g20280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 360aa    MW: 40213.5 Da    PI: 6.951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g20280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006157179123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++Fs+   L  H  +H
  CA05g20280 157 YECKTCNRTFSSFQALGGHRASH 179
                 99**********99999998887 PP

2zf-C2H214.30.00012253275123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  CA05g20280 253 HTCSYCGAEFTSGQALGGHMRRH 275
                 79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-6154186No hitNo description
PfamPF139123.5E-13156181IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.237157184IPR007087Zinc finger, C2H2
SMARTSM003550.063157179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-4251277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.3E-6251278No hitNo description
PROSITE profilePS5015710.367253280IPR007087Zinc finger, C2H2
SMARTSM003550.0079253275IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-11253277IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEAPREEVM GVSKGKRTKR VRPQSLIPFM MISAHSSSTG DGNNDGMVHE EISIVNNNNY  60
NNNNSSPPPA TSDENFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHPYH HHHQTPPIKF  120
FDLFNDDMGL YQPKFNSKKY VETTDLGNGA KAGTYVYECK TCNRTFSSFQ ALGGHRASHR  180
KPKPLTIEPK KQPFFYFSYQ DDPSPTTTTT TPNYKHYNKL LSPTLSPLST QFSNINMDST  240
PNYNKSLPSP RIHTCSYCGA EFTSGQALGG HMRRHRGGAN TNNTILCLSP LSIDQESTNY  300
NLKKPRNGLS LDLNFPAPQE YQNHPPKYPQ EQAQKQQQEQ EQETALVLST TPQLIGCHY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574825.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0V0IHY31e-174A0A0V0IHY3_SOLCH; Putative zinc finger protein ZAT5-like
STRINGSolyc05g055500.1.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-41C2H2 family protein